VAMP
Introduction
Installation
Install Prequisites
Install VAMP
Non-root users
Usage
Align Contigs to Reference
Stitch Together Scaffold
Genome Annotation and Comparison
Commands
compare_genomes.py
fastq_to_fasta.py
find_contig_deletions.py
gff2gtf_simple.py
maf_net.py
makePairedOutput2EQUALfiles_vamp.pl
makePairedOutput2UNEQUALfiles_vamp.pl
TQSfastq_vamp.py
translate_cds.py
Modules
vamp.utils
seq_utils.convert_coordinates
seq_utils.fasta_from_gff
seq_utils.summarize_alignments
seq_utils.utils
VAMP
Docs
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Virus AsseMbly Pipeline (VAMP) documentation
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Virus AsseMbly Pipeline (VAMP) documentation
¶
Contents:
Introduction
Installation
Install Prequisites
Install VAMP
Non-root users
Usage
Align Contigs to Reference
Stitch Together Scaffold
Genome Annotation and Comparison
Commands
compare_genomes.py
fastq_to_fasta.py
find_contig_deletions.py
gff2gtf_simple.py
maf_net.py
makePairedOutput2EQUALfiles_vamp.pl
makePairedOutput2UNEQUALfiles_vamp.pl
TQSfastq_vamp.py
translate_cds.py
Modules
vamp.utils
seq_utils.convert_coordinates
seq_utils.fasta_from_gff
seq_utils.summarize_alignments
seq_utils.utils
Indices and tables
¶
Index
Module Index
Search Page
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